Quantitative Biology

Authors and titles for January 2020

[201] arXiv:2001.08508 (cross-list from physics.med-ph) [pdf, other]

Title: A rapid-onset diffusion functional MRI signal reflects neuromorphological coupling dynamics

Daniel Nunes, Rita Gil, Noam Shemesh

Subjects: Medical Physics (physics.med-ph); Neurons and Cognition (q-bio.NC)

[202] arXiv:2001.08669 (cross-list from cond-mat.stat-mech) [pdf, other]

Title: Criticality in Tissue Homeostasis: Models and Experiments

Somsubhra Ghosh, Indrani Bose

Comments: 23 pages, 11 figures

Journal-ref: J. Stat. Mech. (2020) 013401

Subjects: Statistical Mechanics (cond-mat.stat-mech); Quantitative Methods (q-bio.QM)

[203] arXiv:2001.08805 (cross-list from cs.RO) [pdf, other]

Title: Inexpensive and Portable System for Dexterous High-Density Myoelectric Control of Multiarticulate Prostheses

Jacob A. George, Sridharan Radhakrishnan, Mark R. Brinton, Gregory A. Clark

Comments: IEEE EMBC 2020

Subjects: Robotics (cs.RO); Neurons and Cognition (q-bio.NC)

[204] arXiv:2001.08807 (cross-list from cs.RO) [pdf, other]

Title: Bilaterally Mirrored Movements Improve the Accuracy and Precision of Training Data for Supervised Learning of Neural or Myoelectric Prosthetic Control

Jacob A. George, Troy N. Tully, Paul C. Colgan, Gregory A. Clark

Comments: IEEE EMBC 2020

Subjects: Robotics (cs.RO); Neurons and Cognition (q-bio.NC)

[205] arXiv:2001.09173 (cross-list from physics.med-ph) [pdf, other]

Title: Automatic MRI-Driven Model Calibration for Advanced Brain Tumor Progression Analysis

Klaudius Scheufele, Shashank Subramanian, George Biros

Comments: 10 pages, 5 figures

Subjects: Medical Physics (physics.med-ph); Image and Video Processing (eess.IV); Quantitative Methods (q-bio.QM)

[206] arXiv:2001.09182 (cross-list from eess.SP) [pdf, other]

Title: iGLU 2.0: A new non-invasive, accurate serum glucometer for smart healthcare

Prateek Jain, Amit M Joshi, Navneet Agrawal, Saraju Mohanty

Comments: 19 pages, 17 Figures

Journal-ref: IEEE Transactions on Consumer Electronics-2020

Subjects: Signal Processing (eess.SP); Quantitative Methods (q-bio.QM)

[207] arXiv:2001.09232 (cross-list from physics.optics) [pdf, other]

Title: Spatio-angular fluorescence microscopy III. Constrained angular diffusion, polarized excitation, and high-NA imaging

Talon Chandler, Hari Shroff, Rudolf Oldenbourg, Patrick La Rivière

Comments: 22 pages, 5 figures

Subjects: Optics (physics.optics); Quantitative Methods (q-bio.QM)

[208] arXiv:2001.09424 (cross-list from eess.SP) [pdf, other]

Title: EEG fingerprinting: subject specific signature based on the aperiodic component of power spectrum

Matteo Demuru, Matteo Fraschini

Comments: 11 pages, 2 figures

Subjects: Signal Processing (eess.SP); Computer Vision and Pattern Recognition (cs.CV); Neurons and Cognition (q-bio.NC)

[209] arXiv:2001.09625 (cross-list from math.DS) [pdf, other]

Title: Towards a new classification of bursting patterns: review & extensions

Mathieu Desroches, John Rinzel, Serafim Rodrigues

Comments: 29 pages, 14 figures, 2 tables

Subjects: Dynamical Systems (math.DS); Neurons and Cognition (q-bio.NC)

[210] arXiv:2001.09641 (cross-list from cs.NE) [pdf, other]

Title: Neural Autopoiesis: Organizing Self-Boundary by Stimulus Avoidance in Biological and Artificial Neural Networks

Atsushi Masumori, Lana Sinapayen, Norihiro Maruyama, Takeshi Mita, Douglas Bakkum, Urs Frey, Hirokazu Takahashi, Takashi Ikegami

Subjects: Neural and Evolutionary Computing (cs.NE); Neurons and Cognition (q-bio.NC)

[211] arXiv:2001.09902 (cross-list from cs.LG) [pdf, other]

Title: Predicting Yield Performance of Parents in Plant Breeding: A Neural Collaborative Filtering Approach

Saeed Khaki, Zahra Khalilzadeh, Lizhi Wang

Comments: 13 pages, 4 figures

Journal-ref: PLoS ONE 15(5): e0233382 (2020)

Subjects: Machine Learning (cs.LG); Quantitative Methods (q-bio.QM); Applications (stat.AP); Machine Learning (stat.ML)

[212] arXiv:2001.10118 (cross-list from physics.bio-ph) [pdf, other]

Title: Complex nonlinear capacitance in outer hair cell macro-patches: effects of membrane tension

Joseph Santos-Sacchi, Winston Tan

Comments: 15 pages, 6 figures

Journal-ref: Sci Rep 10, 6222 (2020)

Subjects: Biological Physics (physics.bio-ph); Biomolecules (q-bio.BM)

[213] arXiv:2001.10285 (cross-list from cs.CY) [pdf, other]

Title: Mining social media data for biomedical signals and health-related behavior

Rion Brattig Correia, Ian B. Wood, Johan Bollen, Luis M. Rocha

Comments: To appear in the Annual Review of Biomedical Data Science

Journal-ref: Annual Review of Biomedical Data Science, 3:1 (2020)

Subjects: Computers and Society (cs.CY); Social and Information Networks (cs.SI); Quantitative Methods (q-bio.QM)

[214] arXiv:2001.10313 (cross-list from physics.soc-ph) [pdf, other]

Title: Evolutionary dynamics of higher-order interactions in social networks

Unai Alvarez-Rodriguez, Federico Battiston, Guilherme Ferraz de Arruda, Yamir Moreno, Matjaz Perc, Vito Latora

Comments: 25 pages, 5 figures, supplementary information; published in Nature Human Behaviour

Journal-ref: Nat. Hum. Behav. 5, 586-595 (2021)

Subjects: Physics and Society (physics.soc-ph); Social and Information Networks (cs.SI); Populations and Evolution (q-bio.PE)

[215] arXiv:2001.10605 (cross-list from cs.NE) [pdf, other]

Title: Learning Absolute Sound Source Localisation With Limited Supervisions

Yang Chu, Wayne Luk, Dan Goodman

Subjects: Neural and Evolutionary Computing (cs.NE); Audio and Speech Processing (eess.AS); Neurons and Cognition (q-bio.NC)

[216] arXiv:2001.10620 (cross-list from nlin.AO) [pdf, other]

Title: Recent Advances in Coupled Oscillator Theory

Bard Ermentrout, Youngmin Park, Dan Wilson

Comments: 23 pages, 5 figures, review

Journal-ref: Philos Trans A Math Phys Eng Sci. 2019 Dec 16;377(2160):20190092. Epub 2019 Oct 28

Subjects: Adaptation and Self-Organizing Systems (nlin.AO); Dynamical Systems (math.DS); Quantitative Methods (q-bio.QM)

[217] arXiv:2001.10696 (cross-list from cs.NE) [pdf, other]

Title: Spiking Inception Module for Multi-layer Unsupervised Spiking Neural Networks

Mingyuan Meng, Xingyu Yang, Shanlin Xiao, Zhiyi Yu

Comments: Published at the 2020 International Joint Conference on Neural Networks (IJCNN); Extended from arXiv:2001.01680

Journal-ref: 2020 International Joint Conference on Neural Networks (IJCNN), Glasgow, United Kingdom, 2020, pp. 1-8

Subjects: Neural and Evolutionary Computing (cs.NE); Machine Learning (cs.LG); Neurons and Cognition (q-bio.NC)

[218] arXiv:2001.10788 (cross-list from physics.med-ph) [pdf, other]

Title: Oxygen depletion hypothesis remains controversial: a mathematical model of oxygen depletion during FLASH radiation

Ankang Hu, Rui Qiu, Zhen Wu, Chunyan Li, Hui Zhang, Junli Li

Journal-ref: Radiation Research . 2022. 197(2):175-183

Subjects: Medical Physics (physics.med-ph); Tissues and Organs (q-bio.TO)

[219] arXiv:2001.11293 (cross-list from physics.soc-ph) [pdf, other]

Title: Competition between vaccination and disease spreading

Mozhgan Khanjanianpak, Nahid Azimi-Tafreshi, Claudio Castellano

Comments: 12 pages, 7 figures

Journal-ref: Phys. Rev. E 101, 062306 (2020)

Subjects: Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE)

[220] arXiv:2001.11469 (cross-list from eess.IV) [pdf, other]

Title: Semi-Automatic Generation of Tight Binary Masks and Non-Convex Isosurfaces for Quantitative Analysis of 3D Biological Samples

Sourabh Bhide, Ralf Mikut, Maria Leptin, Johannes Stegmaier

Comments: 5 pages, 2 figures

Subjects: Image and Video Processing (eess.IV); Computer Vision and Pattern Recognition (cs.CV); Cell Behavior (q-bio.CB); Tissues and Organs (q-bio.TO)

[221] arXiv:2001.11618 (cross-list from cond-mat.soft) [pdf, other]

Title: Cooperation among tumor cell subpopulations leads to intratumor heterogeneity

Xin Li, D. Thirumalai

Comments: 29 pages, 8 figures, 1 table

Subjects: Soft Condensed Matter (cond-mat.soft); Cell Behavior (q-bio.CB); Populations and Evolution (q-bio.PE)

[222] arXiv:2001.11663 (cross-list from physics.bio-ph) [pdf, other]

Title: Leader-cell-driven epithelial sheet fingering

Yanjun Yang, Herbert Levine

Subjects: Biological Physics (physics.bio-ph); Cell Behavior (q-bio.CB); Tissues and Organs (q-bio.TO)

[223] arXiv:2001.11711 (cross-list from eess.IV) [pdf, other]

Title: Automated quantification of myocardial tissue characteristics from native T1 mapping using neural networks with Bayesian inference for uncertainty-based quality-control

Esther Puyol Anton, Bram Ruijsink, Christian F. Baumgartner, Matthew Sinclair, Ender Konukoglu, Reza Razavi, Andrew P. King

Subjects: Image and Video Processing (eess.IV); Computer Vision and Pattern Recognition (cs.CV); Medical Physics (physics.med-ph); Quantitative Methods (q-bio.QM)

[224] arXiv:2001.11761 (cross-list from cs.CV) [pdf, other]

Title: Reconstructing Natural Scenes from fMRI Patterns using BigBiGAN

Milad Mozafari, Leila Reddy, Rufin VanRullen

Comments: Accepted to IEEE IJCNN2020

Subjects: Computer Vision and Pattern Recognition (cs.CV); Human-Computer Interaction (cs.HC); Image and Video Processing (eess.IV); Neurons and Cognition (q-bio.NC)

[225] arXiv:2001.11805 (cross-list from physics.soc-ph) [pdf, other]

Title: The ambiguity of nestedness under soft and hard constraints

Matteo Bruno, Fabio Saracco, Diego Garlaschelli, Claudio J. Tessone, Guido Caldarelli

Comments: 16 pages, 12 figures

Journal-ref: Sci Rep 10, 19903 (2020)

Subjects: Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE)

[226] arXiv:2001.11825 (cross-list from cs.LO) [pdf, other]

Title: Recursion, evolution and conscious self

A.D. Arvanitakis

Comments: The differences from the previous version are 1) An ethical statement at the end of the paper and 2) Some new references

Subjects: Logic in Computer Science (cs.LO); Machine Learning (cs.LG); Logic (math.LO); Neurons and Cognition (q-bio.NC); Populations and Evolution (q-bio.PE)