Quantitative Biology

Authors and titles for August 2020

[301] arXiv:2008.12219 (cross-list from cs.AI) [pdf, other]

Title: Analysis of English free association network reveals mechanisms of efficient solution of Remote Association Tests

O.V. Valba, A.S. Gorsky, S.K. Nechaev, M.V. Tamm

Comments: 16 pages, 4 figures, 3 tables (article is substantially revised)

Subjects: Artificial Intelligence (cs.AI); Neurons and Cognition (q-bio.NC)

[302] arXiv:2008.12278 (cross-list from physics.bio-ph) [pdf, other]

Title: Maximum likelihood analysis of non-equilibrium solution-based single-molecule FRET data

Marijn de Boer

Subjects: Biological Physics (physics.bio-ph); Quantitative Methods (q-bio.QM)

[303] arXiv:2008.12337 (cross-list from eess.SY) [pdf, other]

Title: Tracking the time course of reproduction number and lockdown's effect during SARS-CoV-2 epidemic: nonparametric estimation

Gianluigi Pillonetto, Mauro Bisiacco, Giorgio Palù, Claudio Cobelli

Subjects: Systems and Control (eess.SY); Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE)

[304] arXiv:2008.12479 (cross-list from eess.IV) [pdf, other]

Title: Digital pathology-based study of cell- and tissue-level morphologic features in serous borderline ovarian tumor and high-grade serous ovarian cancer

Jun Jiang, Burak Tekin, Ruifeng Guo, Hongfang Liu, Yajue Huang, Chen Wang

Comments: 17 pages, 8 figures

Subjects: Image and Video Processing (eess.IV); Quantitative Methods (q-bio.QM)

[305] arXiv:2008.12568 (cross-list from nlin.AO) [pdf, other]

Title: Causal blankets: Theory and algorithmic framework

Fernando E. Rosas, Pedro A.M. Mediano, Martin Biehl, Shamil Chandaria, Daniel Polani

Subjects: Adaptation and Self-Organizing Systems (nlin.AO); Artificial Intelligence (cs.AI); Neurons and Cognition (q-bio.NC)

[306] arXiv:2008.12636 (cross-list from physics.soc-ph) [pdf, other]

Title: Containing COVID-19 outbreaks using a Firewall

Ezequiel Alvarez, Leandro Da Rold, Federico Lamagna, Manuel Szewc

Comments: Comments welcome. 16 pages, 4 figures

Subjects: Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE)

[307] arXiv:2008.12684 (cross-list from cond-mat.stat-mech) [pdf, other]

Title: Record dynamics of evolving metastable systems: theory and applications

Paolo Sibani, Stefan Boettcher, Henrik Jeldtoft Jensen

Journal-ref: Eur. Phys. J. B (2021) 94 :37

Subjects: Statistical Mechanics (cond-mat.stat-mech); Biological Physics (physics.bio-ph); Populations and Evolution (q-bio.PE)

[308] arXiv:2008.12948 (cross-list from physics.soc-ph) [pdf, other]

Title: The evolution of trust and trustworthiness

Aanjaneya Kumar, Valerio Capraro, Matjaz Perc

Comments: 9 two-column pages, 7 figures; accepted for publication in Journal of the Royal Society Interface

Journal-ref: J. R. Soc. Interface 17, 20200491 (2020)

Subjects: Physics and Society (physics.soc-ph); Social and Information Networks (cs.SI); Populations and Evolution (q-bio.PE)

[309] arXiv:2008.13116 (cross-list from cs.SI) [pdf, other]

Title: Analysis, Modeling, and Representation of COVID-19 Spread: A Case Study on India

Rahul Mishra, Hari Prabhat Gupta, Tanima Dutta

Comments: 10 pages, 14 figures

Subjects: Social and Information Networks (cs.SI); Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE)

[310] arXiv:2008.13192 (cross-list from math.CO) [pdf, other]

Title: Neural Codes With Three Maximal Codewords: Convexity and Minimal Embedding Dimension

Katherine Johnston, Anne Shiu, Clare Spinner

Comments: 8 pages, 6 figures

Journal-ref: Involve 15 (2022) 333-343

Subjects: Combinatorics (math.CO); Neurons and Cognition (q-bio.NC)

[311] arXiv:2008.13412 (cross-list from stat.AP) [pdf, other]

Title: Real-time Prediction of COVID-19 related Mortality using Electronic Health Records

Patrick Schwab, Arash Mehrjou, Sonali Parbhoo, Leo Anthony Celi, Jürgen Hetzel, Markus Hofer, Bernhard Schölkopf, Stefan Bauer

Subjects: Applications (stat.AP); Machine Learning (cs.LG); Quantitative Methods (q-bio.QM)

[312] arXiv:2008.13483 (cross-list from cs.RO) [pdf, other]

Title: Active exploration for body model learning through self-touch on a humanoid robot with artificial skin

Filipe Gama, Maksym Shcherban, Matthias Rolf, Matej Hoffmann

Comments: 8 pages, 10 figures; Joint IEEE 10th International Conference on Development and Learning and Epigenetic Robotics (ICDL-EpiRob)

Subjects: Robotics (cs.RO); Neurons and Cognition (q-bio.NC)

[313] arXiv:2008.13602 (cross-list from cond-mat.stat-mech) [pdf, other]

Title: Joint assessment of density correlations and fluctuations for analysing spatial tree patterns

P. Villegas, A. Cavagna, M. Cencini, H. Fort, T.S. Grigera

Comments: 19 pages, 7 figures and Supp. Inf

Journal-ref: R. Soc. Open Sci.8202200 (2021)

Subjects: Statistical Mechanics (cond-mat.stat-mech); Populations and Evolution (q-bio.PE)

[314] arXiv:2008.13741 (cross-list from cs.DM) [pdf, other]

Title: Collectively canalizing Boolean functions

Claus Kadelka, Benjamin Keilty, Reinhard Laubenbacher

Comments: 17 pages, 3 figures

Journal-ref: Advances in Applied Mathematics 145 (2023): 102475

Subjects: Discrete Mathematics (cs.DM); Combinatorics (math.CO); Molecular Networks (q-bio.MN)