Biological Physics

Authors and titles for recent submissions

• Thu, 14 Nov 2024
• Wed, 13 Nov 2024
• Tue, 12 Nov 2024
• Mon, 11 Nov 2024
• Fri, 8 Nov 2024

See today's new changes

Thu, 14 Nov 2024 (showing 2 of 2 entries )

[1] arXiv:2411.08042 [pdf, html, other]

Title: Hydrodynamic interaction leads to the accumulation of Chlamydomonas reinhardtii near a solid-liquid interface

Chunhe Li, Hongyi Bian, Yateng Qiao, Jin Zhu, Zijie Qu

Subjects: Biological Physics (physics.bio-ph); Soft Condensed Matter (cond-mat.soft)

[2] arXiv:2411.08512 (cross-list from q-bio.PE) [pdf, html, other]

Title: From noisy cell size control to population growth: when variability can be beneficial

Arthur Genthon

Subjects: Populations and Evolution (q-bio.PE); Statistical Mechanics (cond-mat.stat-mech); Biological Physics (physics.bio-ph)

Wed, 13 Nov 2024 (showing 3 of 3 entries )

[3] arXiv:2411.07307 [pdf, other]

Title: Unveiling Long-Range Forces in Light Harvesting Proteins: Pivotal Roles of Temperature and Light

Elsa Perez-Martin, Tristan Beranger, Laurent Bonnet, Frederic Teppe, Alvydas Lisauskas, Ketsukis Ikamas, Elwin Vrouwe, Elena Floriani, Gergely Katona, Didier Marguet, Vania Calandrini, Marco Pettini, Sandra Ruffenach, Jeremie Torres

Subjects: Biological Physics (physics.bio-ph); Statistical Mechanics (cond-mat.stat-mech)

[4] arXiv:2411.08012 (cross-list from cond-mat.soft) [pdf, html, other]

Title: Non-equilibrium phase transitions in hybrid Voronoi models of cell colonies

Mattia Miotto, Giancarlo Ruocco, Matteo Paoluzzi

Comments: 11 pages, 4 figures

Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech); Biological Physics (physics.bio-ph)

[5] arXiv:2411.07798 (cross-list from physics.chem-ph) [pdf, html, other]

Title: MDRefine: a Python package for refining Molecular Dynamics trajectories with experimental data

Ivan Gilardoni, Valerio Piomponi, Thorben Fröhlking, Giovanni Bussi

Comments: 39 pages, 20 figures

Subjects: Chemical Physics (physics.chem-ph); Biological Physics (physics.bio-ph); Computational Physics (physics.comp-ph); Biomolecules (q-bio.BM)

Tue, 12 Nov 2024 (showing 6 of 6 entries )

[6] arXiv:2411.07141 [pdf, html, other]

Title: Cell bulging and extrusion in a three-dimensional bubbly vertex model for curved epithelial sheets

Oliver M. Drozdowski, Ulrich S. Schwarz (Heidelberg University, Germany)

Comments: 15 pages, 10 figures

Subjects: Biological Physics (physics.bio-ph); Soft Condensed Matter (cond-mat.soft); Tissues and Organs (q-bio.TO)

[7] arXiv:2411.07177 (cross-list from cs.RO) [pdf, other]

Title: Biohybrid Microrobots Based on Jellyfish Stinging Capsules and Janus Particles for In Vitro Deep-Tissue Drug Penetration

Sinwook Park, Noga Barak, Tamar Lotan, Gilad Yossifon

Subjects: Robotics (cs.RO); Biological Physics (physics.bio-ph)

[8] arXiv:2411.07110 (cross-list from q-bio.PE) [pdf, html, other]

Title: Hierarchical genotype networks and incipient ecological speciation in Q$\beta$ phage quasispecies

Luis F Seoane, Henry Secaira-Morocho, Ester Lázaro, Susanna Manrubia

Comments: 15 pages (main), 8 pages (appendixes), 4 figures (main), 6 figures (appendixes)

Subjects: Populations and Evolution (q-bio.PE); Adaptation and Self-Organizing Systems (nlin.AO); Biological Physics (physics.bio-ph); Molecular Networks (q-bio.MN)

[9] arXiv:2411.07055 (cross-list from nlin.PS) [pdf, html, other]

Title: Reconstruction of neuromorphic dynamics from a single scalar time series using variational autoencoder and neural network map

Pavel V. Kuptsov, Nataliya V. Stankevich

Comments: 15 pages, 15 figures, 3 tables

Subjects: Pattern Formation and Solitons (nlin.PS); Machine Learning (cs.LG); Biological Physics (physics.bio-ph)

[10] arXiv:2411.06431 (cross-list from q-bio.PE) [pdf, html, other]

Title: A comprehensive representation of selection at loci with multiple alleles that allows complex forms of genotypic fitness

Nikolas Vellnow, Toni I. Gossmann, David Waxman

Comments: 27 Pages, 4 figures

Subjects: Populations and Evolution (q-bio.PE); Biological Physics (physics.bio-ph); Computational Physics (physics.comp-ph)

[11] arXiv:2411.06036 (cross-list from q-bio.BM) [pdf, html, other]

Title: cgNA+min: computation of sequence-dependent dsDNA energy-minimising minicircle configurations

Raushan Singh, Jaroslaw Glowacki, Marius Beaud, Federica Padovano, Robert S. Manning, John H. Maddocks

Subjects: Biomolecules (q-bio.BM); Soft Condensed Matter (cond-mat.soft); Biological Physics (physics.bio-ph)

Mon, 11 Nov 2024 (showing 5 of 5 entries )

[12] arXiv:2411.05709 [pdf, html, other]

Title: Exact solutions of the harmonically confined Vicsek model

L. L. Bonilla, R. González-Albaladejo

Comments: 13 pages, 10 figures, RevTex

Subjects: Biological Physics (physics.bio-ph); Statistical Mechanics (cond-mat.stat-mech); Mathematical Physics (math-ph); Adaptation and Self-Organizing Systems (nlin.AO)

[13] arXiv:2411.05589 (cross-list from physics.app-ph) [pdf, other]

Title: Predicting Resistive Pulse Signatures in Nanopores by Accurately Modeling Access Regions

Martin Charron, Zachary Roelen, Deekshant Wadhwa, Vincent Tabard-Cossa

Subjects: Applied Physics (physics.app-ph); Biological Physics (physics.bio-ph)

[14] arXiv:2411.05587 (cross-list from cond-mat.soft) [pdf, html, other]

Title: Smart navigation through a rotating barrier: Deep reinforcement learning with application to size-based separation of active microagents

Mohammad Hossein Masoudi, Ali Naji

Comments: 12 pages, 5 figures

Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech); Biological Physics (physics.bio-ph); Computational Physics (physics.comp-ph)

[15] arXiv:2411.05347 (cross-list from cond-mat.soft) [pdf, html, other]

Title: Bending Elasticity of the reversible Freely Jointed Chain

Minsu Yi, Dongju Lee, Panayotis Benetatos

Comments: Submitted to The Journal of Chemical Physics. 14 pages, 11 figures

Subjects: Soft Condensed Matter (cond-mat.soft); Biological Physics (physics.bio-ph)

[16] arXiv:2411.05017 (cross-list from q-bio.NC) [pdf, html, other]

Title: Time in a bottle. A psychophysics study of human time perception through aging

Enric Espel Sanchez

Comments: 6 pages, 1 figure

Subjects: Neurons and Cognition (q-bio.NC); Biological Physics (physics.bio-ph)

Fri, 8 Nov 2024 (showing 5 of 5 entries )

[17] arXiv:2411.04390 [pdf, html, other]

Title: The Effect of a Knot on the Thermal Stability of Protein MJ0366: Insights from Molecular Dynamics and Monte Carlo Simulations

A.M. Begun, A.A. Korneev, A.V. Zorina

Comments: 7 pages, 11 figures

Subjects: Biological Physics (physics.bio-ph); Soft Condensed Matter (cond-mat.soft); Chemical Physics (physics.chem-ph)

[18] arXiv:2411.04272 [pdf, html, other]

Title: Thermodynamics of prebiotic synthesis

Michael Grayson

Comments: 10 pages, 4 figures

Subjects: Biological Physics (physics.bio-ph)

[19] arXiv:2411.04261 [pdf, other]

Title: Velocity fluctuation and force scaling during driven polymer transport through a nanopore

Martin Charron, Breeana Elliott, Nada Kerrouri, Liqun He, Vincent Tabard-Cossa

Subjects: Biological Physics (physics.bio-ph); Soft Condensed Matter (cond-mat.soft)

[20] arXiv:2411.04684 (cross-list from q-bio.PE) [pdf, html, other]

Title: Strong anomalous diffusion for free-ranging birds

Ohad Vilk, Motti Charter, Sivan Toledo, Eli Barkai, Ran Nathan

Comments: 12 pages, 4 figures

Subjects: Populations and Evolution (q-bio.PE); Statistical Mechanics (cond-mat.stat-mech); Biological Physics (physics.bio-ph); Data Analysis, Statistics and Probability (physics.data-an); Quantitative Methods (q-bio.QM)

[21] arXiv:2411.04309 (cross-list from cond-mat.soft) [pdf, html, other]

Title: Odd Viscodiffusive Fluids

Alhad Deshpande, Cory Hargus, Karthik Shekhar, Kranthi K. Mandadapu

Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech); Biological Physics (physics.bio-ph); Chemical Physics (physics.chem-ph); Fluid Dynamics (physics.flu-dyn)